J3_6VWN_020

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VWN_020 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.1045

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn in J3

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6VWN|1|2|C|2091
6VWN|1|2|U|2092
6VWN|1|2|G|2093
*
6VWN|1|2|C|2196
6VWN|1|2|U|2197
6VWN|1|2|A|2198
6VWN|1|2|A|2199
6VWN|1|2|C|2200
*
6VWN|1|2|G|2223
6VWN|1|2|G|2224
6VWN|1|2|A|2225
6VWN|1|2|C|2226
6VWN|1|2|A|2227
6VWN|1|2|G|2228

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain F

50S ribosomal protein L9

Chain V

50S ribosomal protein L28