J3_6VWN_032

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

6VWN|1|2|A|504, 6VWN|1|2|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VWN_032 not in the Motif Atlas

Homologous match to J3_5J7L_066

Geometric discrepancy: 0.0724

The information below is about J3_5J7L_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6VWN|1|2|G|30
6VWN|1|2|C|31
*
6VWN|1|2|G|474
6VWN|1|2|C|475
6VWN|1|2|G|476
6VWN|1|2|A|477
6VWN|1|2|A|478
6VWN|1|2|A|479
6VWN|1|2|A|480
6VWN|1|2|G|481
6VWN|1|2|A|482
6VWN|1|2|A|483
6VWN|1|2|C|484
*
6VWN|1|2|G|496
6VWN|1|2|A|497
6VWN|1|2|G|498
6VWN|1|2|U|499
6VWN|1|2|G|500
6VWN|1|2|A|501
6VWN|1|2|A|502
6VWN|1|2|A|503
6VWN|1|2|A|504
6VWN|1|2|A|505
6VWN|1|2|G|506
6VWN|1|2|A|507
6VWN|1|2|A|508
6VWN|1|2|C|509
6VWN|1|2|C|510

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L20

Chain Q

50S ribosomal protein L22

Chain S

50S ribosomal protein L24