3D structure

PDB id
6VWN (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CCUG*CGAUAGUGAACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
6VWN|1|2|U|34, 6VWN|1|2|U|448, 6VWN|1|2|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6VWN_033 not in the Motif Atlas
Homologous match to J3_5J7L_067
Geometric discrepancy: 0.098
The information below is about J3_5J7L_067
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

6VWN|1|2|C|32
6VWN|1|2|C|33
6VWN|1|2|U|34
6VWN|1|2|G|35
*
6VWN|1|2|C|445
6VWN|1|2|G|446
6VWN|1|2|A|447
6VWN|1|2|U|448
6VWN|1|2|A|449
6VWN|1|2|G|450
6VWN|1|2|U|451
6VWN|1|2|G|452
6VWN|1|2|A|453
6VWN|1|2|A|454
6VWN|1|2|C|455
6VWN|1|2|C|456
6VWN|1|2|A|457
6VWN|1|2|G|458
6VWN|1|2|U|459
6VWN|1|2|A|460
6VWN|1|2|C|461
*
6VWN|1|2|G|468
6VWN|1|2|G|469
6VWN|1|2|A|470
6VWN|1|2|A|471
6VWN|1|2|A|472
6VWN|1|2|G|473

Current chains

Chain 2
23S ribosomal RNA

Nearby chains

Chain AA
50S ribosomal protein L34
Chain C
50S ribosomal protein L4
Chain O
50S ribosomal protein L20
Chain R
50S ribosomal protein L23

Coloring options:


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