J3_6VYQ_018

3D structure

PDB id

6VYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 15 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VYQ_018 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.0593

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6VYQ|1|a|C|1298
6VYQ|1|a|G|1299
6VYQ|1|a|G|1300
6VYQ|1|a|A|1301
6VYQ|1|a|A|1302
6VYQ|1|a|G|1303
*
6VYQ|1|a|C|1625
6VYQ|1|a|A|1626
6VYQ|1|a|G|1627
*
6VYQ|1|a|C|1639
6VYQ|1|a|A|1640
6VYQ|1|a|A|1641
6VYQ|1|a|G|1642

Current chains

Chain a

23S rRNA

Nearby chains