J3_6VYR_004

3D structure

PDB id

6VYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 18 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6VYR|1|D|U|871, 6VYR|1|D|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VYR_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0723

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

6VYR|1|D|C|826
6VYR|1|D|U|827
6VYR|1|D|U|828
6VYR|1|D|G|829
*
6VYR|1|D|C|857
6VYR|1|D|G|858
6VYR|1|D|G|859
6VYR|1|D|A|860
6VYR|1|D|G|861
*
6VYR|1|D|C|868
6VYR|1|D|G|869
6VYR|1|D|U|870
6VYR|1|D|U|871
6VYR|1|D|A|872
6VYR|1|D|A|873
6VYR|1|D|G|874

Current chains

Chain D

16S rRNA

Nearby chains

Chain F

30S ribosomal protein S21

Chain G

30S ribosomal protein S2

Chain N

30S ribosomal protein S8