J3_6VYR_019

3D structure

PDB id

6VYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 18 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

6VYR|1|a|A|1609

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VYR_019 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.111

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

6VYR|1|a|C|1306
6VYR|1|a|A|1307
6VYR|1|a|A|1308
6VYR|1|a|G|1309
*
6VYR|1|a|C|1605
6VYR|1|a|C|1606
6VYR|1|a|C|1607
6VYR|1|a|A|1608
6VYR|1|a|A|1609
6VYR|1|a|A|1610
6VYR|1|a|C|1611
*
6VYR|1|a|G|1620
6VYR|1|a|U|1621
6VYR|1|a|G|1622

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34