J3_6VYS_004

3D structure

PDB id

6VYS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing a 21 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6VYS|1|D|U|871, 6VYS|1|D|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VYS_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0724

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

6VYS|1|D|C|826
6VYS|1|D|U|827
6VYS|1|D|U|828
6VYS|1|D|G|829
*
6VYS|1|D|C|857
6VYS|1|D|G|858
6VYS|1|D|G|859
6VYS|1|D|A|860
6VYS|1|D|G|861
*
6VYS|1|D|C|868
6VYS|1|D|G|869
6VYS|1|D|U|870
6VYS|1|D|U|871
6VYS|1|D|A|872
6VYS|1|D|A|873
6VYS|1|D|G|874

Current chains

Chain D

16S rRNA

Nearby chains

Chain F

30S ribosomal protein S21

Chain G

30S ribosomal protein S2

Chain N

30S ribosomal protein S8