J3_6VYS_035

3D structure

PDB id

6VYS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing a 21 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VYS_035 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0554

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6VYS|1|a|G|1424
6VYS|1|a|G|1425
6VYS|1|a|G|1426
6VYS|1|a|A|1427
6VYS|1|a|C|1428
6VYS|1|a|G|1429
*
6VYS|1|a|C|1564
6VYS|1|a|C|1565
*
6VYS|1|a|G|1568
6VYS|1|a|A|1569
6VYS|1|a|A|1570
6VYS|1|a|A|1571
6VYS|1|a|A|1572
6VYS|1|a|G|1573
6VYS|1|a|C|1574

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L2