J3_6VYT_021

3D structure

PDB id

6VYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A2 (TTC-A2) containing a 15 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

14 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VYT_021 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0841

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6VYT|1|a|C|2091
6VYT|1|a|U|2092
6VYT|1|a|G|2093
*
6VYT|1|a|C|2196
6VYT|1|a|U|2197
6VYT|1|a|A|2198
6VYT|1|a|A|2199
6VYT|1|a|C|2200
*
6VYT|1|a|G|2223
6VYT|1|a|G|2224
6VYT|1|a|A|2225
6VYT|1|a|C|2226
6VYT|1|a|A|2227
6VYT|1|a|G|2228

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L28

Chain h

50S ribosomal protein L2

Chain r

50S ribosomal protein L9