J3_6VYU_010

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VYU_010 not in the Motif Atlas

Homologous match to J3_5J7L_009

Geometric discrepancy: 0.0831

The information below is about J3_5J7L_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6VYU|1|D|U|1073
6VYU|1|D|G|1074
*
6VYU|1|D|U|1083
6VYU|1|D|G|1084
6VYU|1|D|U|1085
6VYU|1|D|U|1086
6VYU|1|D|G|1087
*
6VYU|1|D|C|1098
6VYU|1|D|G|1099
6VYU|1|D|C|1100
6VYU|1|D|A|1101
6VYU|1|D|A|1102

Current chains

Chain D

16S rRNA

Nearby chains

Chain F

30S ribosomal protein S21

Chain G

30S ribosomal protein S2

Chain K

30S ribosomal protein S5