J3_6VYU_021

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VYU_021 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0841

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6VYU|1|a|C|2091
6VYU|1|a|U|2092
6VYU|1|a|G|2093
*
6VYU|1|a|C|2196
6VYU|1|a|U|2197
6VYU|1|a|A|2198
6VYU|1|a|A|2199
6VYU|1|a|C|2200
*
6VYU|1|a|G|2223
6VYU|1|a|G|2224
6VYU|1|a|A|2225
6VYU|1|a|C|2226
6VYU|1|a|A|2227
6VYU|1|a|G|2228

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L28

Chain h

50S ribosomal protein L2

Chain r

50S ribosomal protein L9