3D structure

PDB id
6VYW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex C3 (TTC-C3) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
7 Å

Loop

Sequence
CCUG*CGAUAGUGAACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
6VYW|1|a|U|34, 6VYW|1|a|U|448, 6VYW|1|a|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6VYW_033 not in the Motif Atlas
Homologous match to J3_5J7L_067
Geometric discrepancy: 0.0617
The information below is about J3_5J7L_067
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

6VYW|1|a|C|32
6VYW|1|a|C|33
6VYW|1|a|U|34
6VYW|1|a|G|35
*
6VYW|1|a|C|445
6VYW|1|a|G|446
6VYW|1|a|A|447
6VYW|1|a|U|448
6VYW|1|a|A|449
6VYW|1|a|G|450
6VYW|1|a|U|451
6VYW|1|a|G|452
6VYW|1|a|A|453
6VYW|1|a|A|454
6VYW|1|a|C|455
6VYW|1|a|C|456
6VYW|1|a|A|457
6VYW|1|a|G|458
6VYW|1|a|U|459
6VYW|1|a|A|460
6VYW|1|a|C|461
*
6VYW|1|a|G|468
6VYW|1|a|G|469
6VYW|1|a|A|470
6VYW|1|a|A|471
6VYW|1|a|A|472
6VYW|1|a|G|473

Current chains

Chain a
23S rRNA

Nearby chains

Chain 2
50S ribosomal protein L23
Chain l
50S ribosomal protein L4
Chain m
50S ribosomal protein L34
Chain z
50S ribosomal protein L20

Coloring options:


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