3D structure

PDB id
6VYX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site
Experimental method
ELECTRON MICROSCOPY
Resolution
9.9 Å

Loop

Sequence
CUG*CUAAC*GGACAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6VYX_021 not in the Motif Atlas
Homologous match to J3_5J7L_044
Geometric discrepancy: 0.084
The information below is about J3_5J7L_044
Detailed Annotation
Kink-turn in J3
Broad Annotation
No text annotation
Motif group
J3_89368.5
Basepair signature
cWW-tSH-tHW-F-cWW-tHH-cWW
Number of instances in this motif group
3

Unit IDs

6VYX|1|a|C|2091
6VYX|1|a|U|2092
6VYX|1|a|G|2093
*
6VYX|1|a|C|2196
6VYX|1|a|U|2197
6VYX|1|a|A|2198
6VYX|1|a|A|2199
6VYX|1|a|C|2200
*
6VYX|1|a|G|2223
6VYX|1|a|G|2224
6VYX|1|a|A|2225
6VYX|1|a|C|2226
6VYX|1|a|A|2227
6VYX|1|a|G|2228

Current chains

Chain a
23S rRNA

Nearby chains

Chain c
50S ribosomal protein L28
Chain h
50S ribosomal protein L2
Chain r
50S ribosomal protein L9

Coloring options:


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