J3_6VYY_009
3D structure
- PDB id
- 6VYY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex C5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.9 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6VYY_009 not in the Motif Atlas
- Homologous match to J3_5J7L_008
- Geometric discrepancy: 0.0932
- The information below is about J3_5J7L_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6VYY|1|D|C|1063
6VYY|1|D|G|1064
6VYY|1|D|U|1065
6VYY|1|D|C|1066
6VYY|1|D|A|1067
6VYY|1|D|G|1068
*
6VYY|1|D|C|1107
6VYY|1|D|G|1108
6VYY|1|D|C|1109
6VYY|1|D|A|1110
6VYY|1|D|A|1111
6VYY|1|D|C|1112
6VYY|1|D|C|1113
*
6VYY|1|D|G|1187
6VYY|1|D|A|1188
6VYY|1|D|U|1189
6VYY|1|D|G|1190
6VYY|1|D|A|1191
6VYY|1|D|C|1192
6VYY|1|D|G|1193
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain G
- 30S ribosomal protein S2
- Chain I
- 30S ribosomal protein S3
- Chain K
- 30S ribosomal protein S5
- Chain M
- 30S ribosomal protein S7
- Chain O
- 30S ribosomal protein S9
- Chain P
- 30S ribosomal protein S10
- Chain S
- 30S ribosomal protein S14
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