J3_6VYZ_032

3D structure

PDB id

6VYZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C6 (TTC-C6) containing mRNA with a 21 nt long spacer, NusA, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

6VYZ|1|a|A|504, 6VYZ|1|a|A|508

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VYZ_032 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1031

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

6VYZ|1|a|G|30
6VYZ|1|a|C|31
*
6VYZ|1|a|G|474
6VYZ|1|a|C|475
6VYZ|1|a|G|476
6VYZ|1|a|A|477
6VYZ|1|a|A|478
6VYZ|1|a|A|479
6VYZ|1|a|A|480
6VYZ|1|a|G|481
6VYZ|1|a|A|482
6VYZ|1|a|A|483
6VYZ|1|a|C|484
*
6VYZ|1|a|G|496
6VYZ|1|a|A|497
6VYZ|1|a|G|498
6VYZ|1|a|U|499
6VYZ|1|a|G|500
6VYZ|1|a|A|501
6VYZ|1|a|A|502
6VYZ|1|a|A|503
6VYZ|1|a|A|504
6VYZ|1|a|A|505
6VYZ|1|a|G|506
6VYZ|1|a|A|507
6VYZ|1|a|A|508
6VYZ|1|a|C|509
6VYZ|1|a|C|510

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain 3

50S ribosomal protein L24

Chain z

50S ribosomal protein L20