J3_6VZ2_004

3D structure

PDB id

6VZ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D1 (TTC-D1) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6VZ2|1|D|U|871, 6VZ2|1|D|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VZ2_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0723

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

6VZ2|1|D|C|826
6VZ2|1|D|U|827
6VZ2|1|D|U|828
6VZ2|1|D|G|829
*
6VZ2|1|D|C|857
6VZ2|1|D|G|858
6VZ2|1|D|G|859
6VZ2|1|D|A|860
6VZ2|1|D|G|861
*
6VZ2|1|D|C|868
6VZ2|1|D|G|869
6VZ2|1|D|U|870
6VZ2|1|D|U|871
6VZ2|1|D|A|872
6VZ2|1|D|A|873
6VZ2|1|D|G|874

Current chains

Chain D

16S rRNA

Nearby chains

Chain F

30S ribosomal protein S21

Chain G

30S ribosomal protein S2

Chain N

30S ribosomal protein S8