3D structure

PDB id
6VZ3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex D2 (TTC-D2) containing mRNA with a 27 nt long spacer
Experimental method
ELECTRON MICROSCOPY
Resolution
8.9 Å

Loop

Sequence
CCUG*CGAUAGUGAACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
6VZ3|1|a|U|34, 6VZ3|1|a|U|448, 6VZ3|1|a|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6VZ3_033 not in the Motif Atlas
Homologous match to J3_5J7L_067
Geometric discrepancy: 0.0617
The information below is about J3_5J7L_067
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

6VZ3|1|a|C|32
6VZ3|1|a|C|33
6VZ3|1|a|U|34
6VZ3|1|a|G|35
*
6VZ3|1|a|C|445
6VZ3|1|a|G|446
6VZ3|1|a|A|447
6VZ3|1|a|U|448
6VZ3|1|a|A|449
6VZ3|1|a|G|450
6VZ3|1|a|U|451
6VZ3|1|a|G|452
6VZ3|1|a|A|453
6VZ3|1|a|A|454
6VZ3|1|a|C|455
6VZ3|1|a|C|456
6VZ3|1|a|A|457
6VZ3|1|a|G|458
6VZ3|1|a|U|459
6VZ3|1|a|A|460
6VZ3|1|a|C|461
*
6VZ3|1|a|G|468
6VZ3|1|a|G|469
6VZ3|1|a|A|470
6VZ3|1|a|A|471
6VZ3|1|a|A|472
6VZ3|1|a|G|473

Current chains

Chain a
23S rRNA

Nearby chains

Chain 2
50S ribosomal protein L23
Chain l
50S ribosomal protein L4
Chain m
50S ribosomal protein L34
Chain z
50S ribosomal protein L20

Coloring options:


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