J3_6VZ5_025
3D structure
- PDB id
- 6VZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex D3 (TTC-D3) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- GAAC*GUUGAU*AAUGAAC
- Length
- 17 nucleotides
- Bulged bases
- 6VZ5|1|a|U|2833, 6VZ5|1|a|A|2835
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6VZ5_025 not in the Motif Atlas
- Homologous match to J3_5J7L_048
- Geometric discrepancy: 0.1233
- The information below is about J3_5J7L_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64069.1
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
6VZ5|1|a|G|2812
6VZ5|1|a|A|2813
6VZ5|1|a|A|2814
6VZ5|1|a|C|2815
*
6VZ5|1|a|G|2831
6VZ5|1|a|U|2832
6VZ5|1|a|U|2833
6VZ5|1|a|G|2834
6VZ5|1|a|A|2835
6VZ5|1|a|U|2836
*
6VZ5|1|a|A|2882
6VZ5|1|a|A|2883
6VZ5|1|a|U|2884
6VZ5|1|a|G|2885
6VZ5|1|a|A|2886
6VZ5|1|a|A|2887
6VZ5|1|a|C|2888
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L22
- Chain i
- 50S ribosomal protein L32
- Chain j
- 50S ribosomal protein L3
- Chain w
- 50S ribosomal protein L17
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