J3_6VZJ_012

3D structure

PDB id

6VZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

6VZJ|1|D|U|1240, 6VZJ|1|D|C|1302

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VZJ_012 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.119

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

6VZJ|1|D|C|1237
6VZJ|1|D|A|1238
6VZJ|1|D|A|1239
6VZJ|1|D|U|1240
6VZJ|1|D|G|1241
*
6VZJ|1|D|C|1296
6VZJ|1|D|G|1297
6VZJ|1|D|U|1298
6VZJ|1|D|A|1299
6VZJ|1|D|G|1300
6VZJ|1|D|U|1301
6VZJ|1|D|C|1302
6VZJ|1|D|C|1303
*
6VZJ|1|D|G|1334
6VZJ|1|D|U|1335
6VZJ|1|D|C|1336
6VZJ|1|D|G|1337

Current chains

Chain D

16S rRNA

Nearby chains

Chain M

30S ribosomal protein S7

Chain X

30S ribosomal protein S13