3D structure

PDB id
6VZJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG
Experimental method
ELECTRON MICROSCOPY
Resolution
4.1 Å

Loop

Sequence
CGGAAG*CAG*CAAG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6VZJ_018 not in the Motif Atlas
Homologous match to J3_5J7L_041
Geometric discrepancy: 0.0593
The information below is about J3_5J7L_041
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32852.6
Basepair signature
cWW-tSH-F-F-F-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

6VZJ|1|a|C|1298
6VZJ|1|a|G|1299
6VZJ|1|a|G|1300
6VZJ|1|a|A|1301
6VZJ|1|a|A|1302
6VZJ|1|a|G|1303
*
6VZJ|1|a|C|1625
6VZJ|1|a|A|1626
6VZJ|1|a|G|1627
*
6VZJ|1|a|C|1639
6VZJ|1|a|A|1640
6VZJ|1|a|A|1641
6VZJ|1|a|G|1642

Current chains

Chain a
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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