J3_6VZJ_019

3D structure

PDB id

6VZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

6VZJ|1|a|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VZJ_019 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1109

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6VZJ|1|a|C|1306
6VZJ|1|a|A|1307
6VZJ|1|a|A|1308
6VZJ|1|a|G|1309
*
6VZJ|1|a|C|1605
6VZJ|1|a|C|1606
6VZJ|1|a|C|1607
6VZJ|1|a|A|1608
6VZJ|1|a|A|1609
6VZJ|1|a|A|1610
6VZJ|1|a|C|1611
*
6VZJ|1|a|G|1620
6VZJ|1|a|U|1621
6VZJ|1|a|G|1622

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34