J3_6W2S_016
3D structure
- PDB id
- 6W2S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- CACUG*CGUGAUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 6W2S|1|A|U|1535, 6W2S|1|A|G|1603
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6W2S_016 not in the Motif Atlas
- Homologous match to J3_8C3A_044
- Geometric discrepancy: 0.1943
- The information below is about J3_8C3A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.4
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6W2S|1|A|C|1532
6W2S|1|A|A|1533
6W2S|1|A|C|1534
6W2S|1|A|U|1535
6W2S|1|A|G|1536
*
6W2S|1|A|C|1597
6W2S|1|A|G|1598
6W2S|1|A|U|1599
6W2S|1|A|G|1600
6W2S|1|A|A|1601
6W2S|1|A|U|1602
6W2S|1|A|G|1603
6W2S|1|A|G|1604
*
6W2S|1|A|C|1635
6W2S|1|A|G|1636
6W2S|1|A|A|1637
6W2S|1|A|G|1638
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain G
- uS7
- Chain T
- uS13
- Chain U
- eS19
- Chain a
- eS25
Coloring options: