J3_6W2T_003

3D structure

PDB id

6W2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.36 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6W2T_003 not in the Motif Atlas

Geometric match to J3_4V88_078

Geometric discrepancy: 0.0999

The information below is about J3_4V88_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.1

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

6W2T|1|a|A|40
6W2T|1|a|G|41
*
6W2T|1|a|C|481
6W2T|1|a|G|482
6W2T|1|a|C|483
6W2T|1|a|A|484
6W2T|1|a|A|485
6W2T|1|a|A|486
6W2T|1|a|U|487
*
6W2T|1|a|A|512
6W2T|1|a|G|513
6W2T|1|a|U|514

Current chains

Chain a

18S rRNA

Nearby chains

Chain K

uS4

Chain Y

uS12