J3_6W2T_013

3D structure

PDB id

6W2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.36 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6W2T_013 not in the Motif Atlas

Homologous match to J3_8C3A_085

Geometric discrepancy: 0.1634

The information below is about J3_8C3A_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.2

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6W2T|1|a|U|1350
6W2T|1|a|G|1351
*
6W2T|1|a|U|1360
6W2T|1|a|G|1361
6W2T|1|a|U|1362
6W2T|1|a|C|1363
*
6W2T|1|a|G|1375
6W2T|1|a|A|1376
6W2T|1|a|U|1377
6W2T|1|a|A|1378
6W2T|1|a|A|1379

Current chains

Chain a

18S rRNA

Nearby chains

Chain B

uS2

Chain D

uS5

Chain S

eS17