J3_6W2T_015
3D structure
- PDB id
- 6W2T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.36 Å
Loop
- Sequence
- AGAUUAAG*CGCGCAAAU*AGU
- Length
- 20 nucleotides
- Bulged bases
- 6W2T|1|a|A|46
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6W2T_015 not in the Motif Atlas
- Homologous match to J3_8P9A_069
- Geometric discrepancy: 0.0815
- The information below is about J3_8P9A_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.1
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6W2T|1|a|A|40
6W2T|1|a|G|41
6W2T|1|a|A|42
6W2T|1|a|U|43
6W2T|1|a|U|44
6W2T|1|a|A|45
6W2T|1|a|A|46
6W2T|1|a|G|47
*
6W2T|1|a|C|479
6W2T|1|a|G|480
6W2T|1|a|C|481
6W2T|1|a|G|482
6W2T|1|a|C|483
6W2T|1|a|A|484
6W2T|1|a|A|485
6W2T|1|a|A|486
6W2T|1|a|U|487
*
6W2T|1|a|A|512
6W2T|1|a|G|513
6W2T|1|a|U|514
Current chains
- Chain a
- 18S rRNA
Nearby chains
- Chain K
- uS4
- Chain Y
- uS12
Coloring options: