J3_6W6L_014

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6W6L_014 not in the Motif Atlas

Geometric match to J3_8VTW_006

Geometric discrepancy: 0.1418

The information below is about J3_8VTW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.4

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6W6L|1|t|C|3908
6W6L|1|t|G|3909
6W6L|1|t|G|3910
*
6W6L|1|t|C|4044
6W6L|1|t|U|4045
6W6L|1|t|G|4046
6W6L|1|t|A|4047
6W6L|1|t|C|4048
*
6W6L|1|t|G|4130
6W6L|1|t|G|4131
6W6L|1|t|A|4132
6W6L|1|t|C|4133
6W6L|1|t|A|4134
6W6L|1|t|G|4135

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L8

Chain I

60S ribosomal protein L7a

Chain O

60S ribosomal protein L15