J3_6W6L_019
3D structure
- PDB id
- 6W6L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human ribosome-TMCO1 translocon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.84 Å
Loop
- Sequence
- CA*UUGAAAAGAAC*GAGUUCAAGAGGGCG
- Length
- 28 nucleotides
- Bulged bases
- 6W6L|1|t|G|403, 6W6L|1|t|G|407
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6W6L_019 not in the Motif Atlas
- Geometric match to J3_5TBW_062
- Geometric discrepancy: 0.0996
- The information below is about J3_5TBW_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6W6L|1|D|C|19
6W6L|1|D|A|20
*
6W6L|1|t|U|374
6W6L|1|t|U|375
6W6L|1|t|G|376
6W6L|1|t|A|377
6W6L|1|t|A|378
6W6L|1|t|A|379
6W6L|1|t|A|380
6W6L|1|t|G|381
6W6L|1|t|A|382
6W6L|1|t|A|383
6W6L|1|t|C|384
*
6W6L|1|t|G|395
6W6L|1|t|A|396
6W6L|1|t|G|397
6W6L|1|t|U|398
6W6L|1|t|U|399
6W6L|1|t|C|400
6W6L|1|t|A|401
6W6L|1|t|A|402
6W6L|1|t|G|403
6W6L|1|t|A|404
6W6L|1|t|G|405
6W6L|1|t|G|406
6W6L|1|t|G|407
6W6L|1|t|C|408
6W6L|1|t|G|409
Current chains
- Chain D
- 5.8S ribosomal RNA
- Chain t
- 28S ribosomal RNA
Nearby chains
- Chain 1
- Protein transport protein Sec61 subunit alpha isoform 1
- Chain 6
- Calcium load-activated calcium channel
- Chain 7
- Coiled-coil domain-containing protein 47
- Chain C
- 60S ribosomal protein L4
- Chain Q
- 60S ribosomal protein L17
- Chain Z
- 60S ribosomal protein L26
- Chain m
- 60S ribosomal protein L39
- Chain y
- Nascent chain mixture
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