J3_6W7M_004

3D structure

PDB id

6W7M (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S-Inactive-high-Mg2+ + carbon layer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6W7M|1|A|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6W7M_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.2436

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

6W7M|1|A|C|826
6W7M|1|A|U|827
6W7M|1|A|U|828
6W7M|1|A|G|829
*
6W7M|1|A|C|857
6W7M|1|A|G|858
6W7M|1|A|G|859
6W7M|1|A|A|860
6W7M|1|A|G|861
*
6W7M|1|A|C|868
6W7M|1|A|G|869
6W7M|1|A|U|870
6W7M|1|A|U|871
6W7M|1|A|A|872
6W7M|1|A|A|873
6W7M|1|A|G|874

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain H

30S ribosomal protein S8