3D structure

PDB id
6W7N (explore in PDB, NAKB, or RNA 3D Hub)
Description
30S-Inactive-low-Mg2+ Class A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CGUCAG*CGCAACC*GAUGACG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6W7N_010 not in the Motif Atlas
Homologous match to J3_4LFB_007
Geometric discrepancy: 0.1471
The information below is about J3_4LFB_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_01343.1
Basepair signature
cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

6W7N|1|A|C|1063
6W7N|1|A|G|1064
6W7N|1|A|U|1065
6W7N|1|A|C|1066
6W7N|1|A|A|1067
6W7N|1|A|G|1068
*
6W7N|1|A|C|1107
6W7N|1|A|G|1108
6W7N|1|A|C|1109
6W7N|1|A|A|1110
6W7N|1|A|A|1111
6W7N|1|A|C|1112
6W7N|1|A|C|1113
*
6W7N|1|A|G|1187
6W7N|1|A|A|1188
6W7N|1|A|U|1189
6W7N|1|A|G|1190
6W7N|1|A|A|1191
6W7N|1|A|C|1192
6W7N|1|A|G|1193

Current chains

Chain A
16S rRNA

Nearby chains

Chain C
30S ribosomal protein S3
Chain E
30S ribosomal protein S5
Chain I
30S ribosomal protein S9
Chain J
30S ribosomal protein S10
Chain N
30S ribosomal protein S14

Coloring options:


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