J3_6WD3_021

3D structure

PDB id

6WD3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-B1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCUA

Length

25 nucleotides

Bulged bases

6WD3|1|3|A|958, 6WD3|1|3|A|975, 6WD3|1|3|G|976, 6WD3|1|3|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WD3_021 not in the Motif Atlas

Homologous match to J3_5J7L_006

Geometric discrepancy: 0.1168

The information below is about J3_5J7L_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6WD3|1|3|U|955
6WD3|1|3|U|956
6WD3|1|3|U|957
6WD3|1|3|A|958
6WD3|1|3|A|959
6WD3|1|3|U|960
6WD3|1|3|U|961
6WD3|1|3|C|962
*
6WD3|1|3|G|973
6WD3|1|3|A|974
6WD3|1|3|A|975
6WD3|1|3|G|976
6WD3|1|3|A|977
6WD3|1|3|A|978
6WD3|1|3|C|979
6WD3|1|3|C|980
6WD3|1|3|U|981
6WD3|1|3|U|982
6WD3|1|3|A|983
6WD3|1|3|C|984
*
6WD3|1|3|G|1221
6WD3|1|3|G|1222
6WD3|1|3|C|1223
6WD3|1|3|U|1224
6WD3|1|3|A|1225

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain O

30S ribosomal protein S10

Chain R

30S ribosomal protein S13

Chain S

30S ribosomal protein S14

Chain X

30S ribosomal protein S19