J3_6WD3_027

3D structure

PDB id

6WD3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-B1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

6WD3|1|3|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WD3_027 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.2619

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6WD3|1|3|C|1237
6WD3|1|3|A|1238
6WD3|1|3|A|1239
6WD3|1|3|U|1240
6WD3|1|3|G|1241
*
6WD3|1|3|C|1296
6WD3|1|3|G|1297
6WD3|1|3|U|1298
6WD3|1|3|A|1299
6WD3|1|3|G|1300
6WD3|1|3|U|1301
6WD3|1|3|C|1302
6WD3|1|3|C|1303
*
6WD3|1|3|G|1334
6WD3|1|3|U|1335
6WD3|1|3|C|1336
6WD3|1|3|G|1337

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain 6

Transfer RNA; tRNA

Chain L

30S ribosomal protein S7

Chain R

30S ribosomal protein S13