J3_6WDC_023

3D structure

PDB id

6WDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CGUCAG*CGCAACC*GAUGACG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WDC_023 not in the Motif Atlas

Homologous match to J3_4LFB_007

Geometric discrepancy: 0.1586

The information below is about J3_4LFB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08394.3

Basepair signature

cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6WDC|1|3|C|1063
6WDC|1|3|G|1064
6WDC|1|3|U|1065
6WDC|1|3|C|1066
6WDC|1|3|A|1067
6WDC|1|3|G|1068
*
6WDC|1|3|C|1107
6WDC|1|3|G|1108
6WDC|1|3|C|1109
6WDC|1|3|A|1110
6WDC|1|3|A|1111
6WDC|1|3|C|1112
6WDC|1|3|C|1113
*
6WDC|1|3|G|1187
6WDC|1|3|A|1188
6WDC|1|3|U|1189
6WDC|1|3|G|1190
6WDC|1|3|A|1191
6WDC|1|3|C|1192
6WDC|1|3|G|1193

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain G

30S ribosomal protein S2

Chain H

30S ribosomal protein S3

Chain J

30S ribosomal protein S5

Chain L

30S ribosomal protein S7

Chain N

30S ribosomal protein S9

Chain O

30S ribosomal protein S10

Chain S

30S ribosomal protein S14