J3_6WDC_027

3D structure

PDB id

6WDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

6WDC|1|1|A|504, 6WDC|1|1|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WDC_027 not in the Motif Atlas

Homologous match to J3_5J7L_066

Geometric discrepancy: 0.1217

The information below is about J3_5J7L_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6WDC|1|1|G|30
6WDC|1|1|C|31
*
6WDC|1|1|G|474
6WDC|1|1|C|475
6WDC|1|1|G|476
6WDC|1|1|A|477
6WDC|1|1|A|478
6WDC|1|1|A|479
6WDC|1|1|A|480
6WDC|1|1|G|481
6WDC|1|1|A|482
6WDC|1|1|A|483
6WDC|1|1|C|484
*
6WDC|1|1|G|496
6WDC|1|1|A|497
6WDC|1|1|G|498
6WDC|1|1|U|499
6WDC|1|1|G|500
6WDC|1|1|A|501
6WDC|1|1|A|502
6WDC|1|1|A|503
6WDC|1|1|A|504
6WDC|1|1|A|505
6WDC|1|1|G|506
6WDC|1|1|A|507
6WDC|1|1|A|508
6WDC|1|1|C|509
6WDC|1|1|C|510

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain q

50S ribosomal protein L20

Chain s

50S ribosomal protein L22

Chain u

50S ribosomal protein L24