J3_6WDJ_033
3D structure
- PDB id
- 6WDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GCCUAAC*GGGGAAUAU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 6WDJ|1|3|C|48, 6WDJ|1|3|A|50, 6WDJ|1|3|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6WDJ_033 not in the Motif Atlas
- Homologous match to J3_5J7L_050
- Geometric discrepancy: 0.1141
- The information below is about J3_5J7L_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6WDJ|1|3|G|46
6WDJ|1|3|C|47
6WDJ|1|3|C|48
6WDJ|1|3|U|49
6WDJ|1|3|A|50
6WDJ|1|3|A|51
6WDJ|1|3|C|52
*
6WDJ|1|3|G|359
6WDJ|1|3|G|360
6WDJ|1|3|G|361
6WDJ|1|3|G|362
6WDJ|1|3|A|363
6WDJ|1|3|A|364
6WDJ|1|3|U|365
6WDJ|1|3|A|366
6WDJ|1|3|U|367
*
6WDJ|1|3|A|393
6WDJ|1|3|G|394
6WDJ|1|3|C|395
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain Q
- 30S ribosomal protein S12
- Chain U
- 30S ribosomal protein S16
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