J3_6WDR_002

3D structure

PDB id

6WDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGAG*CAG*UCGAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WDR_002 not in the Motif Atlas

Geometric match to J3_4V88_032

Geometric discrepancy: 0.1564

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

6WDR|1|2|A|1006
6WDR|1|2|G|1007
6WDR|1|2|A|1008
6WDR|1|2|G|1009
*
6WDR|1|2|C|1019
6WDR|1|2|A|1020
6WDR|1|2|G|1021
*
6WDR|1|2|U|1031
6WDR|1|2|C|1032
6WDR|1|2|G|1033
6WDR|1|2|A|1034
6WDR|1|2|A|1035
6WDR|1|2|U|1036

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4-A

Chain J

40S ribosomal protein S9-A

Chain Y

40S ribosomal protein S24-A