J3_6WDR_004

3D structure

PDB id

6WDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WDR_004 not in the Motif Atlas

Homologous match to J3_8C3A_039

Geometric discrepancy: 0.2948

The information below is about J3_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.3

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6WDR|1|2|U|1320
6WDR|1|2|G|1321
6WDR|1|2|G|1322
6WDR|1|2|A|1323
*
6WDR|1|2|U|1620
6WDR|1|2|A|1621
6WDR|1|2|C|1622
*
6WDR|1|2|G|1726
6WDR|1|2|G|1727
6WDR|1|2|A|1728
6WDR|1|2|A|1729

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S5

Chain P

40S ribosomal protein S15

Chain T

40S ribosomal protein S19-A