J3_6WNT_004
3D structure
- PDB id
- 6WNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 50S ribosomal subunit without free 5S rRNA and perturbed PTC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAG*CGAAC*GAUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6WNT_004 not in the Motif Atlas
- Geometric match to J3_4WF9_003
- Geometric discrepancy: 0.0837
- The information below is about J3_4WF9_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69816.1
- Basepair signature
- cWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
6WNT|1|4|C|698
6WNT|1|4|A|699
6WNT|1|4|G|700
*
6WNT|1|4|C|732
6WNT|1|4|G|733
6WNT|1|4|A|734
6WNT|1|4|A|735
6WNT|1|4|C|736
*
6WNT|1|4|G|760
6WNT|1|4|A|761
6WNT|1|4|U|762
6WNT|1|4|G|763
Current chains
- Chain 4
- 23s-5s joint ribosomal RNA
Nearby chains
- Chain b
- 50S ribosomal protein L2
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