3D structure

PDB id
6WNT (explore in PDB, NAKB, or RNA 3D Hub)
Description
50S ribosomal subunit without free 5S rRNA and perturbed PTC
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CAG*CGAAC*GAUG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6WNT_004 not in the Motif Atlas
Geometric match to J3_4WF9_003
Geometric discrepancy: 0.0837
The information below is about J3_4WF9_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_69816.1
Basepair signature
cWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
9

Unit IDs

6WNT|1|4|C|698
6WNT|1|4|A|699
6WNT|1|4|G|700
*
6WNT|1|4|C|732
6WNT|1|4|G|733
6WNT|1|4|A|734
6WNT|1|4|A|735
6WNT|1|4|C|736
*
6WNT|1|4|G|760
6WNT|1|4|A|761
6WNT|1|4|U|762
6WNT|1|4|G|763

Current chains

Chain 4
23s-5s joint ribosomal RNA

Nearby chains

Chain b
50S ribosomal protein L2

Coloring options:


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