J3_6WNT_016
3D structure
- PDB id
- 6WNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 50S ribosomal subunit without free 5S rRNA and perturbed PTC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 6WNT|1|4|U|34, 6WNT|1|4|U|448, 6WNT|1|4|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6WNT_016 not in the Motif Atlas
- Geometric match to J3_5J7L_067
- Geometric discrepancy: 0.0744
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
6WNT|1|4|C|32
6WNT|1|4|C|33
6WNT|1|4|U|34
6WNT|1|4|G|35
*
6WNT|1|4|C|445
6WNT|1|4|G|446
6WNT|1|4|A|447
6WNT|1|4|U|448
6WNT|1|4|A|449
6WNT|1|4|G|450
6WNT|1|4|U|451
6WNT|1|4|G|452
6WNT|1|4|A|453
6WNT|1|4|A|454
6WNT|1|4|C|455
6WNT|1|4|C|456
6WNT|1|4|A|457
6WNT|1|4|G|458
6WNT|1|4|U|459
6WNT|1|4|A|460
6WNT|1|4|C|461
*
6WNT|1|4|G|468
6WNT|1|4|G|469
6WNT|1|4|A|470
6WNT|1|4|A|471
6WNT|1|4|A|472
6WNT|1|4|G|473
Current chains
- Chain 4
- 23s-5s joint ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L34
- Chain d
- 50S ribosomal protein L4
- Chain q
- 50S ribosomal protein L20
- Chain t
- 50S ribosomal protein L23
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