3D structure

PDB id
6WNV (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome without free 5S rRNA and with a perturbed PTC
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CGGAAG*CAG*CAAG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6WNV_019 not in the Motif Atlas
Geometric match to J3_5J7L_041
Geometric discrepancy: 0.127
The information below is about J3_5J7L_041
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32852.6
Basepair signature
cWW-tSH-F-F-F-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

6WNV|1|4|C|1426
6WNV|1|4|G|1427
6WNV|1|4|G|1428
6WNV|1|4|A|1429
6WNV|1|4|A|1430
6WNV|1|4|G|1431
*
6WNV|1|4|C|1753
6WNV|1|4|A|1754
6WNV|1|4|G|1755
*
6WNV|1|4|C|1767
6WNV|1|4|A|1768
6WNV|1|4|A|1769
6WNV|1|4|G|1770

Current chains

Chain 4
23s-5s joint ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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