J3_6WNV_019
3D structure
- PDB id
- 6WNV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome without free 5S rRNA and with a perturbed PTC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGGAAG*CAG*CAAG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6WNV_019 not in the Motif Atlas
- Geometric match to J3_5J7L_041
- Geometric discrepancy: 0.127
- The information below is about J3_5J7L_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32852.6
- Basepair signature
- cWW-tSH-F-F-F-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6WNV|1|4|C|1426
6WNV|1|4|G|1427
6WNV|1|4|G|1428
6WNV|1|4|A|1429
6WNV|1|4|A|1430
6WNV|1|4|G|1431
*
6WNV|1|4|C|1753
6WNV|1|4|A|1754
6WNV|1|4|G|1755
*
6WNV|1|4|C|1767
6WNV|1|4|A|1768
6WNV|1|4|A|1769
6WNV|1|4|G|1770
Current chains
- Chain 4
- 23s-5s joint ribosomal RNA
Nearby chains
No other chains within 10ÅColoring options: