J3_6WNV_020
3D structure
- PDB id
- 6WNV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome without free 5S rRNA and with a perturbed PTC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CAAG*CCCAAAC*GUG
- Length
- 14 nucleotides
- Bulged bases
- 6WNV|1|4|A|1737
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6WNV_020 not in the Motif Atlas
- Geometric match to J3_7A0S_007
- Geometric discrepancy: 0.1278
- The information below is about J3_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_71677.1
- Basepair signature
- cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6WNV|1|4|C|1434
6WNV|1|4|A|1435
6WNV|1|4|A|1436
6WNV|1|4|G|1437
*
6WNV|1|4|C|1733
6WNV|1|4|C|1734
6WNV|1|4|C|1735
6WNV|1|4|A|1736
6WNV|1|4|A|1737
6WNV|1|4|A|1738
6WNV|1|4|C|1739
*
6WNV|1|4|G|1748
6WNV|1|4|U|1749
6WNV|1|4|G|1750
Current chains
- Chain 4
- 23s-5s joint ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L34
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