J3_6WNW_020

3D structure

PDB id

6WNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WNW_020 not in the Motif Atlas

Geometric match to J3_5J7L_041

Geometric discrepancy: 0.1162

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6WNW|1|4|C|1426
6WNW|1|4|G|1427
6WNW|1|4|G|1428
6WNW|1|4|A|1429
6WNW|1|4|A|1430
6WNW|1|4|G|1431
*
6WNW|1|4|C|1753
6WNW|1|4|A|1754
6WNW|1|4|G|1755
*
6WNW|1|4|C|1767
6WNW|1|4|A|1768
6WNW|1|4|A|1769
6WNW|1|4|G|1770

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains