J3_6WNW_021

3D structure

PDB id

6WNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

6WNW|1|4|A|1737

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WNW_021 not in the Motif Atlas

Geometric match to J3_7A0S_007

Geometric discrepancy: 0.1186

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6WNW|1|4|C|1434
6WNW|1|4|A|1435
6WNW|1|4|A|1436
6WNW|1|4|G|1437
*
6WNW|1|4|C|1733
6WNW|1|4|C|1734
6WNW|1|4|C|1735
6WNW|1|4|A|1736
6WNW|1|4|A|1737
6WNW|1|4|A|1738
6WNW|1|4|C|1739
*
6WNW|1|4|G|1748
6WNW|1|4|U|1749
6WNW|1|4|G|1750

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34