J3_6WNW_036

3D structure

PDB id

6WNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WNW_036 not in the Motif Atlas

Geometric match to J3_5J7L_069

Geometric discrepancy: 0.0936

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6WNW|1|4|G|1552
6WNW|1|4|G|1553
6WNW|1|4|G|1554
6WNW|1|4|A|1555
6WNW|1|4|C|1556
6WNW|1|4|G|1557
*
6WNW|1|4|C|1692
6WNW|1|4|C|1693
*
6WNW|1|4|G|1696
6WNW|1|4|A|1697
6WNW|1|4|A|1698
6WNW|1|4|A|1699
6WNW|1|4|A|1700
6WNW|1|4|G|1701
6WNW|1|4|C|1702

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L2