J3_6WOO_001

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WOO_001 not in the Motif Atlas

Geometric match to J3_4V88_078

Geometric discrepancy: 0.0933

The information below is about J3_4V88_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.1

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

6WOO|1|2|A|40
6WOO|1|2|G|41
*
6WOO|1|2|C|432
6WOO|1|2|G|433
6WOO|1|2|C|434
6WOO|1|2|A|435
6WOO|1|2|A|436
6WOO|1|2|A|437
6WOO|1|2|U|438
*
6WOO|1|2|A|463
6WOO|1|2|G|464
6WOO|1|2|U|465

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

eIF5B

Chain JJ

uS4

Chain XX

uS12