3D structure

PDB id
6WOO (explore in PDB, NAKB, or RNA 3D Hub)
Description
CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
UGGA*UAC*GGAA
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6WOO_006 not in the Motif Atlas
Homologous match to J3_4V88_036
Geometric discrepancy: 0.1148
The information below is about J3_4V88_036
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_52655.2
Basepair signature
cWW-tSH-cWW-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

6WOO|1|2|U|1168
6WOO|1|2|G|1169
6WOO|1|2|G|1170
6WOO|1|2|A|1171
*
6WOO|1|2|U|1468
6WOO|1|2|A|1469
6WOO|1|2|C|1470
*
6WOO|1|2|G|1574
6WOO|1|2|G|1575
6WOO|1|2|A|1576
6WOO|1|2|A|1577

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain 3
Transfer RNA; tRNA
Chain FF
uS7
Chain QQ
uS19
Chain SS
uS13
Chain TT
eS19

Coloring options:


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