3D structure

PDB id
6WOO (explore in PDB, NAKB, or RNA 3D Hub)
Description
CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
UCUUAG*CGAGAC*GCAAUA
Length
18 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6WOO_009 not in the Motif Atlas
Homologous match to J3_8P9A_080
Geometric discrepancy: 0.3389
The information below is about J3_8P9A_080
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_99563.1
Basepair signature
cWW-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F
Number of instances in this motif group
1

Unit IDs

6WOO|1|2|U|1283
6WOO|1|2|C|1284
6WOO|1|2|U|1285
6WOO|1|2|U|1286
6WOO|1|2|A|1287
6WOO|1|2|G|1288
*
6WOO|1|2|C|1327
6WOO|1|2|G|1328
6WOO|1|2|A|1329
6WOO|1|2|G|1330
6WOO|1|2|A|1331
6WOO|1|2|C|1332
*
6WOO|1|2|G|1419
6WOO|1|2|C|1420
6WOO|1|2|A|1421
6WOO|1|2|A|1422
6WOO|1|2|U|1423
6WOO|1|2|A|1424

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain CC
uS5
Chain DD
uS3
Chain QQ
uS19
Chain RR
eS17
Chain UU
uS10
Chain dd
uS14

Coloring options:


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