J3_6WOO_009
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6WOO_009 not in the Motif Atlas
- Homologous match to J3_8P9A_080
- Geometric discrepancy: 0.3389
- The information below is about J3_8P9A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_99563.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
6WOO|1|2|U|1283
6WOO|1|2|C|1284
6WOO|1|2|U|1285
6WOO|1|2|U|1286
6WOO|1|2|A|1287
6WOO|1|2|G|1288
*
6WOO|1|2|C|1327
6WOO|1|2|G|1328
6WOO|1|2|A|1329
6WOO|1|2|G|1330
6WOO|1|2|A|1331
6WOO|1|2|C|1332
*
6WOO|1|2|G|1419
6WOO|1|2|C|1420
6WOO|1|2|A|1421
6WOO|1|2|A|1422
6WOO|1|2|U|1423
6WOO|1|2|A|1424
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain CC
- uS5
- Chain DD
- uS3
- Chain QQ
- uS19
- Chain RR
- eS17
- Chain UU
- uS10
- Chain dd
- uS14
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