3D structure

PDB id
6WOO (explore in PDB, NAKB, or RNA 3D Hub)
Description
CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
CACUG*CGUGCUGG*CGAG
Length
17 nucleotides
Bulged bases
6WOO|1|2|U|1473, 6WOO|1|2|U|1535
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6WOO_012 not in the Motif Atlas
Homologous match to J3_4V88_041
Geometric discrepancy: 0.2613
The information below is about J3_4V88_041
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.3
Basepair signature
cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW
Number of instances in this motif group
5

Unit IDs

6WOO|1|2|C|1470
6WOO|1|2|A|1471
6WOO|1|2|C|1472
6WOO|1|2|U|1473
6WOO|1|2|G|1474
*
6WOO|1|2|C|1533
6WOO|1|2|G|1534
6WOO|1|2|U|1535
6WOO|1|2|G|1536
6WOO|1|2|C|1537
6WOO|1|2|U|1538
6WOO|1|2|G|1539
6WOO|1|2|G|1540
*
6WOO|1|2|C|1571
6WOO|1|2|G|1572
6WOO|1|2|A|1573
6WOO|1|2|G|1574

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain FF
uS7
Chain SS
uS13
Chain TT
eS19
Chain ZZ
eS25

Coloring options:


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