J3_6WOO_015
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UC*GAGGACUGCG*CAAGGA
- Length
- 18 nucleotides
- Bulged bases
- 6WOO|1|5|A|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6WOO_015 not in the Motif Atlas
- Homologous match to J3_5TBW_003
- Geometric discrepancy: 0.1002
- The information below is about J3_5TBW_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_15033.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-F-cWS-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6WOO|1|5|U|502
6WOO|1|5|C|503
*
6WOO|1|5|G|588
6WOO|1|5|A|589
6WOO|1|5|G|590
6WOO|1|5|G|591
6WOO|1|5|A|592
6WOO|1|5|C|593
6WOO|1|5|U|594
6WOO|1|5|G|595
6WOO|1|5|C|596
6WOO|1|5|G|597
*
6WOO|1|5|C|606
6WOO|1|5|A|607
6WOO|1|5|A|608
6WOO|1|5|G|609
6WOO|1|5|G|610
6WOO|1|5|A|611
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain C
- uL4
- Chain E
- eL6
- Chain F
- uL30
- Chain e
- eL32
Coloring options: