J3_6WOO_024
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AUUG*CUUAUU*AAGACAUU
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6WOO_024 not in the Motif Atlas
- Homologous match to J3_8C3A_008
- Geometric discrepancy: 0.1143
- The information below is about J3_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_18654.1
- Basepair signature
- cWW-F-F-tSH-tHW-F-F-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
6WOO|1|5|A|2432
6WOO|1|5|U|2433
6WOO|1|5|U|2434
6WOO|1|5|G|2435
*
6WOO|1|5|C|2512
6WOO|1|5|U|2513
6WOO|1|5|U|2514
6WOO|1|5|A|2515
6WOO|1|5|U|2516
6WOO|1|5|U|2517
*
6WOO|1|5|A|2590
6WOO|1|5|A|2591
6WOO|1|5|G|2592
6WOO|1|5|A|2593
6WOO|1|5|C|2594
6WOO|1|5|A|2595
6WOO|1|5|U|2596
6WOO|1|5|U|2597
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain A
- uL2
- Chain G
- eL8
- Chain N
- eL15
- Chain i
- eL36
Coloring options: