J3_6WOO_030

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

6WOO|1|2|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WOO_030 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0742

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6WOO|1|2|A|40
6WOO|1|2|G|41
6WOO|1|2|A|42
6WOO|1|2|U|43
6WOO|1|2|U|44
6WOO|1|2|A|45
6WOO|1|2|A|46
6WOO|1|2|G|47
*
6WOO|1|2|C|430
6WOO|1|2|G|431
6WOO|1|2|C|432
6WOO|1|2|G|433
6WOO|1|2|C|434
6WOO|1|2|A|435
6WOO|1|2|A|436
6WOO|1|2|A|437
6WOO|1|2|U|438
*
6WOO|1|2|A|463
6WOO|1|2|G|464
6WOO|1|2|U|465

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

eIF5B

Chain II

eS8

Chain JJ

uS4

Chain XX

uS12